PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03884.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 365aa    MW: 37431.4 Da    PI: 4.967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03884.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12189234555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zmw_sc03884.1.g00040.1.am.mk 189 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 234
                                   99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-13182238No hitNo description
SuperFamilySSF474594.58E-17182244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQPSGREMKG DSEGGQEDDF FNQLLSTPPT AWAELDSGKS PWELPAGSSE APAFDESALL  60
ASRLHHDQIG GDKPVMLHLS DLHGLAGVGG GEDGGNAGFL PLPLFTDRTR EDQALYNGFG  120
AAGTHGASAV QPFGQGGPMP AQSFGGGAAS AGGTATAGAP ASEATSRGGA APPRQQRVRA  180
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQIQVKVL  240
SMSRLGGASA VAPLVANMSP EGNGNGTEIE NGSSSLRLTE QQVAKLMEED TGSAMQYLQG  300
KGLCLMPISL ASVISSATSS SLPTGGAGGP QRDSGSPATT SPPLANGASG GDSRTVRDAG  360
SGEKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-135uncharacterized protein LOC100284814
SwissprotQ9ZUG92e-73BH066_ARATH; Transcription factor bHLH66
TrEMBLB6TXR41e-135B6TXR4_MAIZE; BHLH transcription factor
STRINGSi017553m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118